SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5ibya1 (5iby A:1-247)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2186950Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. 2186951Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) (S)
  5. 2187333Family d.104.1.0: automated matches [227172] (1 protein)
    not a true family
  6. 2187334Protein automated matches [226887] (11 species)
    not a true protein
  7. 2287678Species Enterococcus faecalis [TaxId:226185] [330979] (5 PDB entries)
  8. 2287722Domain d5ibya1: 5iby A:1-247 [331023]
    Other proteins in same PDB: d5ibya2, d5ibya3
    automated match to d1vqza2
    complexed with lpa

Details for d5ibya1

PDB Entry: 5iby (more details), 1.85 Å

PDB Description: crystal structure of enterococcus faecalis lipoate-protein ligase a (lpla-2) in complex with lipoic acid
PDB Compounds: (A:) Lipoate--protein ligase

SCOPe Domain Sequences for d5ibya1:

Sequence, based on SEQRES records: (download)

>d5ibya1 d.104.1.0 (A:1-247) automated matches {Enterococcus faecalis [TaxId: 226185]}
mifvpnenndprvnlaietylltempldepillfyinepsiiigrnqntieeinkeyvde
hgihvvrrlsgggavyhdhgnlnfsfimpddgnsfrdfakvtqpiiqalhdlgvegaelk
grndlvindmkfsgnamyatngrmfahgtlmfdsdidevvntlkvrkdkieskgiksvrs
rvtnikpflsedkqemtteefrqeillkifgvdsidqvktyeltdqdwaainkiseqyyr
nwdwnyg

Sequence, based on observed residues (ATOM records): (download)

>d5ibya1 d.104.1.0 (A:1-247) automated matches {Enterococcus faecalis [TaxId: 226185]}
mifvpnenndprvnlaietylltempldepillfyinepsiiigrnqntieeinkeyvde
hgihvvrrlsgggavyhdhgnlnfsfimpddgnsfrdfakvtqpiiqalhdlgvegaelk
grndlvindmkfsgnamyatngrmfahgtlmfdsdidevvntlrvtnikpflsedkqemt
teefrqeillkifgvdsidqvktyeltdqdwaainkiseqyyrnwdwnyg

SCOPe Domain Coordinates for d5ibya1:

Click to download the PDB-style file with coordinates for d5ibya1.
(The format of our PDB-style files is described here.)

Timeline for d5ibya1:

  • d5ibya1 appears in periodic updates to SCOPe 2.06 starting on 2017-03-16