SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Synechocystis sp. [TaxId: 1148]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2214634Fold d.248: Coproporphyrinogen III oxidase [102885] (2 superfamilies)
    alpha-beta(6)-alpha(2)-beta-alpha(n); 3 layers alpha/beta/alpha; antiparallel sheet: order 1234567
  4. 2214675Superfamily d.248.2: Ferredoxin-dependent bilin reductase [254140] (1 family) (S)
    Pfam PF05996; PubMed 16380422; possibly related to (d.248.1) based on remote homology to chlorophyll catabolic enzimes discussed in PubMed 11283349
  5. 2214676Family d.248.2.1: Ferredoxin-dependent bilin reductase [254184] (2 protein domains)
  6. 2214695Protein automated matches [254531] (2 species)
    not a true protein
  7. 2287664Species Synechocystis sp. [TaxId:1148] [330965] (3 PDB entries)

PDB entries in Species: Synechocystis sp. [TaxId: 1148]:

  1. Domain(s) for 5b4h:
  2. Domain(s) for 5b4i:
  3. Domain(s) for 5b4j:

More info for Species Synechocystis sp. [TaxId:1148] from d.248.2.1 automated matches

Timeline for Species Synechocystis sp. [TaxId:1148] from d.248.2.1 automated matches:

  • Species Synechocystis sp. [TaxId:1148] from d.248.2.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-03-16