SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Vibrio fischeri [TaxId: 312309]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2069505Fold b.81: Single-stranded left-handed beta-helix [51160] (4 superfamilies)
    superhelix turns are made of parallel beta-strands and (short) turns
  4. 2069506Superfamily b.81.1: Trimeric LpxA-like enzymes [51161] (9 families) (S)
    superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands
  5. 2069791Family b.81.1.0: automated matches [191560] (1 protein)
    not a true family
  6. 2069792Protein automated matches [190967] (29 species)
    not a true protein
  7. 2287558Species Vibrio fischeri [TaxId:312309] [330859] (1 PDB entry)

PDB entry in Species: Vibrio fischeri [TaxId: 312309]:

More info for Species Vibrio fischeri [TaxId:312309] from b.81.1.0 automated matches

Timeline for Species Vibrio fischeri [TaxId:312309] from b.81.1.0 automated matches:

  • Species Vibrio fischeri [TaxId:312309] from b.81.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-03-09