SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5ilia2 (5ili A:221-548)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2010547Fold a.128: Terpenoid synthases [48575] (1 superfamily)
    multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers
  4. 2010548Superfamily a.128.1: Terpenoid synthases [48576] (6 families) (S)
    duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J
  5. 2010765Family a.128.1.3: Terpenoid cyclase C-terminal domain [48583] (3 protein domains)
    automatically mapped to Pfam PF03936
  6. 2010790Protein automated matches [227033] (2 species)
    not a true protein
  7. 2010791Species Tobacco (Nicotiana tabacum) [TaxId:4097] [225866] (23 PDB entries)
  8. 2287377Domain d5ilia2: 5ili A:221-548 [330678]
    Other proteins in same PDB: d5ilia1
    automated match to d3m00a2
    complexed with 3cx, 3fx, mg

Details for d5ilia2

PDB Entry: 5ili (more details), 1.9 Å

PDB Description: tobacco 5-epi-aristolochene synthase with capso buffer molecule and mg2+ ions
PDB Compounds: (A:) 5-epi-aristolochene synthase

SCOPe Domain Sequences for d5ilia2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5ilia2 a.128.1.3 (A:221-548) automated matches {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
knnvllrfakldfnllqmlhkqelaqvsrwwkdldfvttlpyardrvvecyfwalgvyfe
pqysqarvmlvktismisivddtfdaygtvkeleaytdaiqrwdineidrlpdymkisyk
aildlykdyekelssagrshivchaiermkevvrnynvestwfiegytppvseylsnala
tttyyylattsylgmksateqdfewlsknpkileasviicrviddtatyeveksrgqiat
gieccmrdygistkeamakfqnmaetawkdinegllrptpvstefltpilnlarivevty
ihnldgythpekvlkphiinllvdsiki

SCOPe Domain Coordinates for d5ilia2:

Click to download the PDB-style file with coordinates for d5ilia2.
(The format of our PDB-style files is described here.)

Timeline for d5ilia2:

  • d5ilia2 appears in periodic updates to SCOPe 2.06 starting on 2017-03-08

View in 3D
Domains from same chain:
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d5ilia1