SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5ecmf1 (5ecm F:4-83)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2116932Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
  4. 2116933Superfamily c.47.1: Thioredoxin-like [52833] (24 families) (S)
  5. 2118983Family c.47.1.0: automated matches [191312] (1 protein)
    not a true family
  6. 2118984Protein automated matches [190056] (160 species)
    not a true protein
  7. 2120090Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [196344] (14 PDB entries)
  8. 2287356Domain d5ecmf1: 5ecm F:4-83 [330657]
    Other proteins in same PDB: d5ecmc2, d5ecmf2
    automated match to d3fhsa3
    complexed with gsh, jaa, leu

Details for d5ecmf1

PDB Entry: 5ecm (more details), 1.6 Å

PDB Description: crystal structure of fin219-fip1 complex with ja and leu
PDB Compounds: (F:) Glutathione S-transferase U20

SCOPe Domain Sequences for d5ecmf1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5ecmf1 c.47.1.0 (F:4-83) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

SCOPe Domain Coordinates for d5ecmf1:

Click to download the PDB-style file with coordinates for d5ecmf1.
(The format of our PDB-style files is described here.)

Timeline for d5ecmf1:

  • d5ecmf1 appears in periodic updates to SCOPe 2.06 starting on 2017-03-08

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