SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Campylobacter jejuni [TaxId: 398000]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080656Superfamily c.1.5: Inosine monophosphate dehydrogenase (IMPDH) [51412] (2 families) (S)
    The phosphate moiety of substrate binds in the 'common' phosphate-binding site
  5. 2080703Family c.1.5.0: automated matches [227276] (1 protein)
    not a true family
  6. 2080704Protein automated matches [227084] (14 species)
    not a true protein
  7. 2287181Species Campylobacter jejuni [TaxId:398000] [330482] (4 PDB entries)

PDB entries in Species: Campylobacter jejuni [TaxId: 398000]:

  1. Domain(s) for 5uqf:
    1. 2287187Domain d5uqfb1: 5uqf B:1-482 [330488]
      Other proteins in same PDB: d5uqfa2, d5uqfb2, d5uqfc2
      automated match to d4mz8b_
      complexed with 8ky, cl, edo, gol, imp, k, so4
    2. 2287206Domain d5uqfa1: 5uqf A:1-482 [330507]
      Other proteins in same PDB: d5uqfa2, d5uqfb2, d5uqfc2
      automated match to d4mz8b_
      complexed with 8ky, cl, edo, gol, imp, k, so4
    3. 2287271Domain d5uqfc1: 5uqf C:1-482 [330572]
      Other proteins in same PDB: d5uqfa2, d5uqfb2, d5uqfc2
      automated match to d4mz8b_
      complexed with 8ky, cl, edo, gol, imp, k, so4
  2. Domain(s) for 5uqg:
    1. 2287189Domain d5uqga1: 5uqg A:1-481 [330490]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
    2. 2287215Domain d5uqgg1: 5uqg G:1-481 [330516]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
    3. 2287222Domain d5uqgc1: 5uqg C:1-481 [330523]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
    4. 2287224Domain d5uqgh1: 5uqg H:1-481 [330525]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
    5. 2287276Domain d5uqgf1: 5uqg F:1-481 [330577]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
    6. 2287281Domain d5uqgb1: 5uqg B:1-481 [330582]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
    7. 2287295Domain d5uqgd1: 5uqg D:1-481 [330596]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
    8. 2287322Domain d5uqge1: 5uqg E:1-482 [330623]
      Other proteins in same PDB: d5uqga2, d5uqgb2, d5uqgc2, d5uqgd2, d5uqge2, d5uqgf2, d5uqgg2, d5uqgh2
      automated match to d4mz8b_
      complexed with 8l4, edo, imp, k
  3. Domain(s) for 5uqh:
    1. 2287194Domain d5uqhd1: 5uqh D:1-481 [330495]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
    2. 2287240Domain d5uqhb1: 5uqh B:1-481 [330541]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
    3. 2287248Domain d5uqhe1: 5uqh E:1-482 [330549]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
    4. 2287285Domain d5uqhg1: 5uqh G:1-481 [330586]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
    5. 2287293Domain d5uqha1: 5uqh A:1-481 [330594]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
    6. 2287311Domain d5uqhh1: 5uqh H:1-481 [330612]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
    7. 2287324Domain d5uqhf1: 5uqh F:1-481 [330625]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
    8. 2287326Domain d5uqhc1: 5uqh C:1-481 [330627]
      Other proteins in same PDB: d5uqha2, d5uqhb2, d5uqhc2, d5uqhd2, d5uqhe2, d5uqhf2, d5uqhg2, d5uqhh2
      automated match to d4mz8b_
      complexed with 8l1, edo, imp, ipa, k
  4. Domain(s) for 5urq:
    1. 2287182Domain d5urqb1: 5urq B:1-481 [330483]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k
    2. 2287256Domain d5urqh1: 5urq H:1-482 [330557]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k
    3. 2287269Domain d5urqa1: 5urq A:1-482 [330570]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k
    4. 2287283Domain d5urqc1: 5urq C:1-480 [330584]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k
    5. 2287290Domain d5urqf1: 5urq F:1-481 [330591]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k
    6. 2287302Domain d5urqg1: 5urq G:1-481 [330603]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k
    7. 2287307Domain d5urqd1: 5urq D:1-482 [330608]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k
    8. 2287320Domain d5urqe1: 5urq E:1-481 [330621]
      Other proteins in same PDB: d5urqa2, d5urqb2, d5urqc2, d5urqd2, d5urqe2, d5urqf2, d5urqg2, d5urqh2
      automated match to d4mz8b_
      complexed with 8l7, imp, k

More info for Species Campylobacter jejuni [TaxId:398000] from c.1.5.0 automated matches

Timeline for Species Campylobacter jejuni [TaxId:398000] from c.1.5.0 automated matches:

  • Species Campylobacter jejuni [TaxId:398000] from c.1.5.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-03-02