SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5toqb1 (5toq B:0-411)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2130992Family c.67.1.1: AAT-like [53384] (17 protein domains)
  6. 2131336Protein automated matches [190317] (5 species)
    not a true protein
  7. 2287144Species Sus scrofa [TaxId:9823] [330445] (4 PDB entries)
  8. 2287178Domain d5toqb1: 5toq B:0-411 [330479]
    Other proteins in same PDB: d5toqa2, d5toqb2
    automated match to d3wzfa_

Details for d5toqb1

PDB Entry: 5toq (more details), 1.2 Å

PDB Description: high resolution crystal structure of aat
PDB Compounds: (B:) Aspartate aminotransferase, cytoplasmic

SCOPe Domain Sequences for d5toqb1:

Sequence, based on SEQRES records: (download)

>d5toqb1 c.67.1.1 (B:0-411) automated matches {Sus scrofa [TaxId: 9823]}
mappsvfaevpqaqpvlvfkliadfredpdprkvnlgvgayrtddcqpwvlpvvrkveqr
iannsslnheylpilglaefrtcasrlalgddspalqekrvggvqslggtgalrigaefl
arwyngtnnkdtpvyvssptwenhngvfttagfkdirsyrywdtekrgldlqgflsdlen
apefsifvlhacahnptgtdptpeqwkqiasvmkrrflfpffdsayqgfasgnlekdawa
iryfvsegfelfcaqsfsknfglynervgnltvvakepdsilrvlsqmqkivrvtwsnpp
aqgarivartlsdpelfhewtgnvktmadrilsmrselrarlealktpgtwnhitdqigm
fsftglnpkqveylinqkhiyllpsgrinmcglttknldyvatsiheavtki

Sequence, based on observed residues (ATOM records): (download)

>d5toqb1 c.67.1.1 (B:0-411) automated matches {Sus scrofa [TaxId: 9823]}
mappsvfaevpqaqlgvgayrtddcqpwvlpvvrkveqriannsslnheylpilglaefr
tcasrlalgddspalqekrvggvqslggtgalrigaeflarwyngtnnkdtpvyvssptw
enhngvfttagfkdirsyrywdtekrgldlqgflsdlenapefsifvlhacahnptgtdp
tpeqwkqiasvmkrrflfpffdsayqgfasgnlekdawairyfvsegfelfcaqsfsknf
glynervgnltvvakepdsilrvlsqmqkivrvtwsnppaqgarivartlsdpelfhewt
gnvktmadrilsmrselrarlealktpgtwnhitdqigmfsftglnpkqveylinqkhiy
llpsgrinmcglttknldyvatsiheavtki

SCOPe Domain Coordinates for d5toqb1:

Click to download the PDB-style file with coordinates for d5toqb1.
(The format of our PDB-style files is described here.)

Timeline for d5toqb1:

  • d5toqb1 appears in periodic updates to SCOPe 2.06 starting on 2017-03-02

View in 3D
Domains from same chain:
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d5toqb2