SCOPe 2.06: Domain d5ttdb1: 5ttd B:13-375

Lineage for d5ttdb1 (5ttd B:13-375)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)

6. Protein automated matches [190140] (30 species)
   not a true protein

7. Species Streptococcus pyogenes [TaxId:1314] [330460] (1 PDB entry)

8. Domain d5ttdb1: 5ttd B:13-375 [330461]
   Other proteins in same PDB: d5ttdb2
   automated match to d4ys9b_
   complexed with fmt, mlr

Details for d5ttdb1

PDB Entry: 5ttd, 2 Å

PDB Description: minor pilin fctb from s. pyogenes with engineered intramolecular isopeptide bond

PDB Compounds: (B:) Maltose-binding periplasmic protein,Pilin isopeptide linkage domain protein

SCOPe Domain Sequences for d5ttdb1:

Sequence, based on SEQRES records:

>d5ttdb1 c.94.1.1 (B:13-375) automated matches {Streptococcus pyogenes [TaxId: 1314]}
lviwingdkgynglaqvgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwahdr
fggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkdllpnpp
ktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikdvgvdna
gakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskvnygvtv
lptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalks
yeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdealkdaqt
nag

Sequence, based on observed residues (ATOM records):

>d5ttdb1 c.94.1.1 (B:13-375) automated matches {Streptococcus pyogenes [TaxId: 1314]}
lviwingdkgynglaqvgkkfekdtgikvtvehpdkleekfpqvagpdiifwahdrfggy
aqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkdllpnppktwe
eipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikdvgvdnagaka
gltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskvnygvtvlptf
kgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksyeee
lakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdealkdaqtnag

Timeline for d5ttdb1:

• d5ttdb1 is new in SCOPe 2.06-stable
  
• d5ttdb1 appears in SCOPe 2.07
  
• d5ttdb1 appears in the current release, SCOPe 2.08