SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Sus scrofa [TaxId: 9823]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2130992Family c.67.1.1: AAT-like [53384] (17 protein domains)
  6. 2131336Protein automated matches [190317] (5 species)
    not a true protein
  7. 2287144Species Sus scrofa [TaxId:9823] [330445] (4 PDB entries)

PDB entries in Species: Sus scrofa [TaxId: 9823]:

  1. Domain(s) for 5ton:
    1. 2287157Domain d5tonb1: 5ton B:0-411 [330458]
      Other proteins in same PDB: d5tona2, d5tonb2
      automated match to d3wzfa_
      mutant
    2. 2287317Domain d5tona1: 5ton A:0-412 [330618]
      Other proteins in same PDB: d5tona2, d5tonb2
      automated match to d3wzfa_
      mutant
  2. Domain(s) for 5toq:
    1. 2287145Domain d5toqa1: 5toq A:0-412 [330446]
      Other proteins in same PDB: d5toqa2, d5toqb2
      automated match to d3wzfa_
    2. 2287178Domain d5toqb1: 5toq B:0-411 [330479]
      Other proteins in same PDB: d5toqa2, d5toqb2
      automated match to d3wzfa_
  3. Domain(s) for 5tor:
    1. 2287167Domain d5tora1: 5tor A:0-412 [330468]
      Other proteins in same PDB: d5tora2, d5torb2
      automated match to d3wzfa_
      mutant
    2. 2287173Domain d5torb1: 5tor B:0-411 [330474]
      Other proteins in same PDB: d5tora2, d5torb2
      automated match to d3wzfa_
      mutant
  4. Domain(s) for 5tot:
    1. 2287162Domain d5totb1: 5tot B:0-411 [330463]
      Other proteins in same PDB: d5tota2, d5totb2
      automated match to d3wzfa_
      mutant
    2. 2287165Domain d5tota1: 5tot A:0-412 [330466]
      Other proteins in same PDB: d5tota2, d5totb2
      automated match to d3wzfa_
      mutant

More info for Species Sus scrofa [TaxId:9823] from c.67.1.1 automated matches

Timeline for Species Sus scrofa [TaxId:9823] from c.67.1.1 automated matches:

  • Species Sus scrofa [TaxId:9823] from c.67.1.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-03-02