Lineage for d5n6sd_ (5n6s D:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2082913Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 protein domains)
  6. 2082923Protein Beta-glucosidase A [51528] (9 species)
  7. 2082968Species Thermotoga maritima [TaxId:2336] [89475] (8 PDB entries)
    Uniprot Q08638
  8. 2287139Domain d5n6sd_: 5n6s D: [330440]
    automated match to d1oifa_
    complexed with 8p5, act, cl, edo, imd, peg, pge

Details for d5n6sd_

PDB Entry: 5n6s (more details), 2.1 Å

PDB Description: thermotoga maritima family 1 glycoside hydrolase complexed with carba- cyclophellitol transition state mimic
PDB Compounds: (D:) beta-glucosidase a

SCOPe Domain Sequences for d5n6sd_:

Sequence, based on SEQRES records: (download)

>d5n6sd_ c.1.8.4 (D:) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}
vkkfpegflwgvatasyqiegspladgagmsiwhtfshtpgnvkngdtgdvacdhynrwk
edieiieklgvkayrfsiswprilpegtgrvnqkgldfynriidtllekgitpfvtiyhw
dlpfalqlkggwanreiadwfaeysrvlfenfgdrvknwitlnepwvvaivghlygvhap
gmrdiyvafravhnllraharavkvfretvkdgkigivfnngyfepasekeediravrfm
hqfnnyplflnpiyrgdypelvlefareylpenykddmseiqekidfvglnyysghlvkf
dpdapakvsfverdlpktamgweivpegiywilkkvkeeynppevyitengaafddvvse
dgrvhdqnridylkahigqawkaiqegvplkgyfvwslldnfewaegyskrfgivyvdys
tqkrivkdsgywysnvvknngl

Sequence, based on observed residues (ATOM records): (download)

>d5n6sd_ c.1.8.4 (D:) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}
vkkfpegflwgvatasyqiegspladgagmsiwhtfshtpgnvkngdtgdvacdhynrwk
edieiieklgvkayrfsiswprilpegtgrvnqkgldfynriidtllekgitpfvtiyhw
dlpfalqlkggwanreiadwfaeysrvlfenfgdrvknwitlnepwvvaivghlygvhap
gmrdiyvafravhnllraharavkvfretvkdgkigivfnngyfepasekediravrfmh
qfnnyplflnpiyrgdypelvlefareylpenykddmseiqekidfvglnyysghlvkfd
pdapakvsfverdlpktamgweivpegiywilkkvkeeynppevyitengaafddvvrvh
dqnridylkahigqawkaiqegvplkgyfvwslldnfewaegyskrfgivyvdystqvky
wysnvvknngl

SCOPe Domain Coordinates for d5n6sd_:

Click to download the PDB-style file with coordinates for d5n6sd_.
(The format of our PDB-style files is described here.)

Timeline for d5n6sd_:

  • d5n6sd_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-02