SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5n6sc_ (5n6s C:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2082913Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 protein domains)
  6. 2082923Protein Beta-glucosidase A [51528] (9 species)
  7. 2082968Species Thermotoga maritima [TaxId:2336] [89475] (8 PDB entries)
    Uniprot Q08638
  8. 2287121Domain d5n6sc_: 5n6s C: [330422]
    automated match to d1oifa_
    complexed with 8p5, act, cl, edo, imd, peg, pge

Details for d5n6sc_

PDB Entry: 5n6s (more details), 2.1 Å

PDB Description: thermotoga maritima family 1 glycoside hydrolase complexed with carba- cyclophellitol transition state mimic
PDB Compounds: (C:) beta-glucosidase a

SCOPe Domain Sequences for d5n6sc_:

Sequence, based on SEQRES records: (download)

>d5n6sc_ c.1.8.4 (C:) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}
kkfpegflwgvatasyqiegspladgagmsiwhtfshtpgnvkngdtgdvacdhynrwke
dieiieklgvkayrfsiswprilpegtgrvnqkgldfynriidtllekgitpfvtiyhwd
lpfalqlkggwanreiadwfaeysrvlfenfgdrvknwitlnepwvvaivghlygvhapg
mrdiyvafravhnllraharavkvfretvkdgkigivfnngyfepasekeediravrfmh
qfnnyplflnpiyrgdypelvlefareylpenykddmseiqekidfvglnyysghlvkfd
pdapakvsfverdlpktamgweivpegiywilkkvkeeynppevyitengaafddvvsed
grvhdqnridylkahigqawkaiqegvplkgyfvwslldnfewaegyskrfgivyvdyst
qkrivkdsgywysnvvknngle

Sequence, based on observed residues (ATOM records): (download)

>d5n6sc_ c.1.8.4 (C:) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}
kkfpegflwgvatasyqiegspladgagmsiwhtfshtpgnvkngdtgdvacdhynrwke
dieiieklgvkayrfsiswprilpegtgrvnqkgldfynriidtllekgitpfvtiyhwd
lpfalqlkggwanreiadwfaeysrvlfenfgdrvknwitlnepwvvaivghlygvhapg
mrdiyvafravhnllraharavkvfretdgkigivfnngyfepasekeediravrfmhqf
nnyplflnpiyrgdypelvlefareylpenykddmseiqekidfvglnyysghlvkfdpd
apakvsfverdlpktamgweivpegiywilkkvkeeynppevyitengaafddgrvhdqn
rdylkahigqawkaiqegvplkgyfvwslldnfewaegyskrfgivyvdysvkdsgywys
nvvknngle

SCOPe Domain Coordinates for d5n6sc_:

Click to download the PDB-style file with coordinates for d5n6sc_.
(The format of our PDB-style files is described here.)

Timeline for d5n6sc_:

  • d5n6sc_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-02