SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5gp9b1 (5gp9 B:8-78)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1981148Superfamily a.4.1: Homeodomain-like [46689] (20 families) (S)
    consists only of helices
  5. 1982024Family a.4.1.0: automated matches [191447] (1 protein)
    not a true family
  6. 1982025Protein automated matches [190674] (22 species)
    not a true protein
  7. 2287027Species Bacillus halodurans [TaxId:272558] [330328] (2 PDB entries)
  8. 2287055Domain d5gp9b1: 5gp9 B:8-78 [330356]
    Other proteins in same PDB: d5gp9a2, d5gp9b2
    automated match to d1vi0a1
    complexed with gol, mg, plm

Details for d5gp9b1

PDB Entry: 5gp9 (more details), 1.76 Å

PDB Description: structural analysis of fatty acid degradation regulator fadr from bacillus halodurans
PDB Compounds: (B:) Transcriptional regulator (TetR/AcrR family)

SCOPe Domain Sequences for d5gp9b1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5gp9b1 a.4.1.0 (B:8-78) automated matches {Bacillus halodurans [TaxId: 272558]}
kydqiidaavqviaehgyhqaqvskiakaagvadgtiylyfnnkedvlislfqekmgrfv
dkirsqmneat

SCOPe Domain Coordinates for d5gp9b1:

Click to download the PDB-style file with coordinates for d5gp9b1.
(The format of our PDB-style files is described here.)

Timeline for d5gp9b1:

  • d5gp9b1 appears in periodic updates to SCOPe 2.06 starting on 2017-03-01

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Domains from same chain:
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d5gp9b2