SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5x3ab_ (5x3a B:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004058Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. 2004059Superfamily a.102.1: Six-hairpin glycosidases [48208] (10 families) (S)
  5. 2004283Family a.102.1.0: automated matches [191318] (1 protein)
    not a true family
  6. 2004284Protein automated matches [190108] (16 species)
    not a true protein
  7. 2286981Species Paenibacillus sp. [TaxId:1392929] [330282] (2 PDB entries)
  8. 2286982Domain d5x3ab_: 5x3a B: [330283]
    automated match to d1v5da_
    complexed with ace, peg, pge

Details for d5x3ab_

PDB Entry: 5x3a (more details), 1.79 Å

PDB Description: apo structure of beta-1,3-1,4-glucanase from paenibacillus sp.x4
PDB Compounds: (B:) glucanase

SCOPe Domain Sequences for d5x3ab_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5x3ab_ a.102.1.0 (B:) automated matches {Paenibacillus sp. [TaxId: 1392929]}
apnkpfpqhttytsgsikpnhvtqsamdnsvkakwdswksaylktagtgkyyvkyqsngd
tvseahgygmlatvlmagydsnaqtyfdglyqyykahpssnnsklmawkqnssfqniegd
dsatdgdmdiaysllladkqwgssgsinylqagkdiinaimqsdvnqsqwtlrlgdwatd
ntfknatrpsdfmlnhlkafqaatgdarwanvidktytiinslyngyssstgllpdfvvl
sgstykpasadflegandgsydynscrtpwrittdylmtgdsralnqlnqmnswisakvs
gnpsnvkdgyklngtvtgsggsgafyapfgvsamtssvnqnwlnsvwtktagssnegyye
dsiklfsmivmsgnwwty

SCOPe Domain Coordinates for d5x3ab_:

Click to download the PDB-style file with coordinates for d5x3ab_.
(The format of our PDB-style files is described here.)

Timeline for d5x3ab_:

  • d5x3ab_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-23