SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Paenibacillus sp. [TaxId: 1392929]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004058Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. 2004059Superfamily a.102.1: Six-hairpin glycosidases [48208] (10 families) (S)
  5. 2004283Family a.102.1.0: automated matches [191318] (1 protein)
    not a true family
  6. 2004284Protein automated matches [190108] (16 species)
    not a true protein
  7. 2286981Species Paenibacillus sp. [TaxId:1392929] [330282] (2 PDB entries)

PDB entries in Species: Paenibacillus sp. [TaxId: 1392929]:

  1. Domain(s) for 5x3a:
    1. 2286982Domain d5x3ab_: 5x3a B: [330283]
      automated match to d1v5da_
      complexed with ace, peg, pge
    2. 2287003Domain d5x3aa_: 5x3a A: [330304]
      automated match to d1v5da_
      complexed with ace, peg, pge
  2. Domain(s) for 5xd0:
    1. 2290048Domain d5xd0b_: 5xd0 B: [333349]
      automated match to d1v5da_
      complexed with peg, pge
    2. 2290049Domain d5xd0a_: 5xd0 A: [333350]
      automated match to d1v5da_
      complexed with peg, pge

More info for Species Paenibacillus sp. [TaxId:1392929] from a.102.1.0 automated matches

Timeline for Species Paenibacillus sp. [TaxId:1392929] from a.102.1.0 automated matches:

  • Species Paenibacillus sp. [TaxId:1392929] from a.102.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-23