SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5ifca_ (5ifc A:)

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2223731Fold e.77: PA C-terminal domain-like [254112] (1 superfamily)
    Pfam PF00603; PubMed 18615018; complex fold with N-terminal a+b domain and C-terminal all-a domain
  4. 2223732Superfamily e.77.1: PA C-terminal domain-like [254132] (1 family) (S)
  5. 2223733Family e.77.1.1: PA C-terminal domain-like [254167] (2 protein domains)
  6. 2223737Protein automated matches [254658] (4 species)
    not a true protein
  7. 2286700Species Influenza a virus (strain a/wilson-smith/1933 h1n1) [TaxId:381518] [330001] (7 PDB entries)
  8. 2286772Domain d5ifca_: 5ifc A: [330073]
    automated match to d3cm8a_
    complexed with 6ar, dms

Details for d5ifca_

PDB Entry: 5ifc (more details), 2.65 Å

PDB Description: crystal structure of polymerase acid protein (pa) from influenza a virus, wilson-smith/1933 (h1n1) bound to follow on fragment ebsi-4720 1-(4-bromophenyl)-1h-imidazole
PDB Compounds: (A:) Polymerase acidic protein

SCOPe Domain Sequences for d5ifca_:

Sequence, based on SEQRES records: (download)

>d5ifca_ e.77.1.1 (A:) automated matches {Influenza a virus (strain a/wilson-smith/1933 h1n1) [TaxId: 381518]}
rplrlpdgppcsqrskfllmdalklsiedpshegegiplydaikcmrtffgwkepnvvkp
hekginpnyllswkqvlaelqdieneekiprtknmkktsqlkwalgenmapekvdfddck
dvgdlkqydsdepelrslaswiqnefnkaceltdsswieldeigedaapiehiasmrrny
ftaevshcrateyimkgvyintallnascaamddfqlipmiskcrtkegrrktnlygfii
kgrshlrndtdvvnfvsmefsltdprlephkwekycvlevgdmllrsaighvsrpmflyv
rtngtskikmkwgmemrrcllqslqqiesmieaessvkekdmtkeffenksetwpvgesp
kgveegsigkvcrtllaksvfnslyaspqlegfsaesrklllivqalrdnlepgtfdlgg
lyeaieeclindpwvllnaswfnsflth

Sequence, based on observed residues (ATOM records): (download)

>d5ifca_ e.77.1.1 (A:) automated matches {Influenza a virus (strain a/wilson-smith/1933 h1n1) [TaxId: 381518]}
rplrlpdgppcsqrskfllmdalklsiedpshegegiplydaikcmrtffgwkepnvvkp
hekginpnyllswkqvlaelqdieneekiprtknmkktsqlkwalgeelrslaswiqnef
nkaceltdsswieldeigedaapiehiasmrrnyftaevshcrateyimkgvyintalln
ascaamddfqlipmiskcrtkegrrktnlygfiikgrshlrndtdvvnfvsmefsltdpr
lephkwekycvlevgdmllrsaighvsrpmflyvrtngtskikmkwgmemrrcllqslqq
iesmieaessvkekdmtkeffenkspkgveegsigkvcrtllaksvfnslyaspqlegfs
aesrklllivqalrdnlepggglyeaieeclindpwvllnaswfnsflth

SCOPe Domain Coordinates for d5ifca_:

Click to download the PDB-style file with coordinates for d5ifca_.
(The format of our PDB-style files is described here.)

Timeline for d5ifca_:

  • d5ifca_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-23