SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Bacillus subtilis [TaxId: 224308]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2090218Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2090219Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2094257Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 2094258Protein automated matches [190069] (226 species)
    not a true protein
  7. 2286727Species Bacillus subtilis [TaxId:224308] [330028] (2 PDB entries)

PDB entries in Species: Bacillus subtilis [TaxId: 224308]:

  1. Domain(s) for 5itv:
    1. 2286728Domain d5itvd1: 5itv D:3-255 [330029]
      Other proteins in same PDB: d5itva2, d5itvb2, d5itvc2, d5itvd2
      automated match to d4za2a_
      complexed with nai
    2. 2286753Domain d5itva1: 5itv A:3-255 [330054]
      Other proteins in same PDB: d5itva2, d5itvb2, d5itvc2, d5itvd2
      automated match to d4za2a_
      complexed with nai
    3. 2286802Domain d5itvb1: 5itv B:3-255 [330103]
      Other proteins in same PDB: d5itva2, d5itvb2, d5itvc2, d5itvd2
      automated match to d4za2a_
      complexed with nai
    4. 2286858Domain d5itvc1: 5itv C:3-255 [330159]
      Other proteins in same PDB: d5itva2, d5itvb2, d5itvc2, d5itvd2
      automated match to d4za2a_
      complexed with nai
  2. Domain(s) for 5itw:
    1. 2286739Domain d5itwd1: 5itw D:3-255 [330040]
      Other proteins in same PDB: d5itwa2, d5itwb2, d5itwc2, d5itwd2
      automated match to d4za2a_
      complexed with so4
    2. 2286759Domain d5itwa1: 5itw A:3-255 [330060]
      Other proteins in same PDB: d5itwa2, d5itwb2, d5itwc2, d5itwd2
      automated match to d4za2a_
      complexed with so4
    3. 2286781Domain d5itwc1: 5itw C:3-255 [330082]
      Other proteins in same PDB: d5itwa2, d5itwb2, d5itwc2, d5itwd2
      automated match to d4za2a_
      complexed with so4
    4. 2286861Domain d5itwb1: 5itw B:3-255 [330162]
      Other proteins in same PDB: d5itwa2, d5itwb2, d5itwc2, d5itwd2
      automated match to d4za2a_
      complexed with so4

More info for Species Bacillus subtilis [TaxId:224308] from c.2.1.0 automated matches

Timeline for Species Bacillus subtilis [TaxId:224308] from c.2.1.0 automated matches:

  • Species Bacillus subtilis [TaxId:224308] from c.2.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-22