SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Vibrio cholerae [TaxId: 345073]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143226Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 2143333Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 2143580Family c.92.2.0: automated matches [191548] (1 protein)
    not a true family
  6. 2143581Protein automated matches [190944] (33 species)
    not a true protein
  7. 2286706Species Vibrio cholerae [TaxId:345073] [330007] (2 PDB entries)

PDB entries in Species: Vibrio cholerae [TaxId: 345073]:

  1. Domain(s) for 5ggy:
    1. 2286707Domain d5ggya1: 5ggy A:55-319 [330008]
      Other proteins in same PDB: d5ggya2, d5ggyn2
      automated match to d1efdn_
      complexed with cl
    2. 2286735Domain d5ggyn1: 5ggy N:55-318 [330036]
      Other proteins in same PDB: d5ggya2, d5ggyn2
      automated match to d1efdn_
      complexed with cl
  2. Domain(s) for 5khl:

More info for Species Vibrio cholerae [TaxId:345073] from c.92.2.0 automated matches

Timeline for Species Vibrio cholerae [TaxId:345073] from c.92.2.0 automated matches:

  • Species Vibrio cholerae [TaxId:345073] from c.92.2.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-22