SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Pseudomonas aeruginosa [TaxId: 287]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2133075Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2133076Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2133255Family c.68.1.6: glucose-1-phosphate thymidylyltransferase [53464] (4 protein domains)
    automatically mapped to Pfam PF00483
  6. 2133386Protein automated matches [191218] (4 species)
    not a true protein
  7. 2286669Species Pseudomonas aeruginosa [TaxId:287] [329970] (5 PDB entries)

PDB entries in Species: Pseudomonas aeruginosa [TaxId: 287]:

  1. Domain(s) for 5fts:
    1. 2286676Domain d5ftsb_: 5fts B: [329977]
      automated match to d1fxob_
      complexed with cl, mes, p3i
    2. 2286680Domain d5ftsd_: 5fts D: [329981]
      automated match to d1fxob_
      complexed with cl, mes, p3i
  2. Domain(s) for 5ftv:
    1. 2286670Domain d5ftvb_: 5ftv B: [329971]
      automated match to d1fxob_
      complexed with cl, kdt, mes
    2. 2286681Domain d5ftvd_: 5ftv D: [329982]
      automated match to d1fxob_
      complexed with cl, kdt, mes
  3. Domain(s) for 5fu0:
    1. 2286678Domain d5fu0b_: 5fu0 B: [329979]
      automated match to d1fxob_
      complexed with cl, fkh, mes
    2. 2286679Domain d5fu0d_: 5fu0 D: [329980]
      automated match to d1fxob_
      complexed with cl, fkh, mes
  4. Domain(s) for 5fu8:
    1. 2286694Domain d5fu8d_: 5fu8 D: [329995]
      automated match to d1fxob_
      complexed with cl, dh5, mes
    2. 2286699Domain d5fu8b_: 5fu8 B: [330000]
      automated match to d1fxob_
      complexed with cl, dh5, mes
  5. Domain(s) for 5fuh:
    1. 2286677Domain d5fuhd_: 5fuh D: [329978]
      automated match to d1fxob_
      complexed with cl, gol, hkx, mes
    2. 2286697Domain d5fuhb_: 5fuh B: [329998]
      automated match to d1fxob_
      complexed with cl, gol, hkx, mes

More info for Species Pseudomonas aeruginosa [TaxId:287] from c.68.1.6 automated matches

Timeline for Species Pseudomonas aeruginosa [TaxId:287] from c.68.1.6 automated matches:

  • Species Pseudomonas aeruginosa [TaxId:287] from c.68.1.6 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-22