SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5wt9g_ (5wt9 G:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2019634Protein automated matches [190119] (21 species)
    not a true protein
  7. 2019694Species Human (Homo sapiens) [TaxId:9606] [188740] (164 PDB entries)
  8. 2286665Domain d5wt9g_: 5wt9 G: [329966]
    Other proteins in same PDB: d5wt9l2
    automated match to d3rrqa_
    complexed with fuc, nag

Details for d5wt9g_

PDB Entry: 5wt9 (more details), 2.4 Å

PDB Description: complex structure of pd-1 and nivolumab-fab
PDB Compounds: (G:) Programmed cell death protein 1

SCOPe Domain Sequences for d5wt9g_:

Sequence, based on SEQRES records: (download)

>d5wt9g_ b.1.1.1 (G:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
ldspdrpwnpptfspallvvtegdnatftcsfsntsesfvlnwyrmspsnqtdklaafpe
drsqpgqdcrfrvtqlpngrdfhmsvvrarrndsgtylcgaislapkaqikeslrael

Sequence, based on observed residues (ATOM records): (download)

>d5wt9g_ b.1.1.1 (G:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
ldspdrpwnpptfspallvvtegdnatftcsfsntsesfvlnwyrmspsnqtdklaafpe
rfrvtqlpngrdfhmsvvrarrndsgtylcgaislapkaqikeslrael

SCOPe Domain Coordinates for d5wt9g_:

Click to download the PDB-style file with coordinates for d5wt9g_.
(The format of our PDB-style files is described here.)

Timeline for d5wt9g_:

  • d5wt9g_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-16