SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5umha_ (5umh A:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2034780Fold b.3: Prealbumin-like [49451] (7 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands to common fold
  4. 2035756Superfamily b.3.6: Aromatic compound dioxygenase [49482] (2 families) (S)
  5. 2036175Family b.3.6.0: automated matches [227249] (1 protein)
    not a true family
  6. 2036176Protein automated matches [227026] (3 species)
    not a true protein
  7. 2286603Species Burkholderia multivorans [TaxId:395019] [329904] (1 PDB entry)
  8. 2286662Domain d5umha_: 5umh A: [329963]
    automated match to d1dmha_
    complexed with ca, cl, edo, pg4, pg6, zn

Details for d5umha_

PDB Entry: 5umh (more details), 1.35 Å

PDB Description: crystal structure of catechol 1,2-dioxygenase protein from burkholderia multivorans
PDB Compounds: (A:) catechol 1,2-dioxygenase

SCOPe Domain Sequences for d5umha_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5umha_ b.3.6.0 (A:) automated matches {Burkholderia multivorans [TaxId: 395019]}
vkvfdtkevqdllkaaanlngdagnarfrqivhrllsdlfkaiddlditpdevwagvnyl
nklgqdgeaallaagiglekyldirmdaadraagldggtprtiegplyvagapvrdgvak
idldddadagplvirgtvtgtdgkplagalvecwhanskgfyshfdptgaqtafnlrgav
rtdangkyefrtlmpvgygcppqgatqqllnglgrhgnrpahvhffvsgdghrklttqfn
iegdpliwddfayatreeliphvvdktggaalgmksdaykeiefdivltplldgrdnqvv
hrprasa

SCOPe Domain Coordinates for d5umha_:

Click to download the PDB-style file with coordinates for d5umha_.
(The format of our PDB-style files is described here.)

Timeline for d5umha_:

  • d5umha_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-16