SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5u8pa_ (5u8p A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2090218Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2090219Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2094257Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 2094258Protein automated matches [190069] (226 species)
    not a true protein
  7. 2094600Species Burkholderia cenocepacia [TaxId:216591] [193149] (10 PDB entries)
  8. 2286651Domain d5u8pa_: 5u8p A: [329952]
    automated match to d3r3sa_
    complexed with mg, nad

Details for d5u8pa_

PDB Entry: 5u8p (more details), 1.4 Å

PDB Description: crystal structure of a short chain dehydrogenase from burkholderia cenocepacia j2315 in complex with nad
PDB Compounds: (A:) Short chain dehydrogenase

SCOPe Domain Sequences for d5u8pa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5u8pa_ c.2.1.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
gltnpvdlypkppfphqvqappglasrmqprpdhgeqsyrgrgrlvgrktlvtggdsgig
raaaiafaregadvaigylpveesdarevvaliraagrqavalpgdirdetfcqrlvara
aealggldilvnnaarqqaldsigemttehfdatvktnlygmfwitkaaiphlppgasii
nttsvqavrasanlldyattkagiiaftrslakqlgprgirvnavapgpywtplqssggq
ppetvvnyaagspygrpgqpaeiaplyvalaasetsyangqvwgadgglgif

SCOPe Domain Coordinates for d5u8pa_:

Click to download the PDB-style file with coordinates for d5u8pa_.
(The format of our PDB-style files is described here.)

Timeline for d5u8pa_:

  • d5u8pa_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-16