SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5uofb_ (5uof B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142044Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2142045Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2142537Family c.87.1.0: automated matches [191559] (1 protein)
    not a true family
  6. 2142538Protein automated matches [190965] (26 species)
    not a true protein
  7. 2286577Species Burkholderia multivorans [TaxId:395019] [329878] (1 PDB entry)
  8. 2286645Domain d5uofb_: 5uof B: [329946]
    Other proteins in same PDB: d5uofa2
    automated match to d5hxaa_
    complexed with edo, na, ser

Details for d5uofb_

PDB Entry: 5uof (more details), 1.7 Å

PDB Description: crystal structure of alpha,alpha-trehalose 6-phosphate sythase from burkholderia multivorans
PDB Compounds: (B:) Alpha,alpha-trehalose-phosphate synthase (UDP-forming)

SCOPe Domain Sequences for d5uofb_:

Sequence, based on SEQRES records: (download)

>d5uofb_ c.87.1.0 (B:) automated matches {Burkholderia multivorans [TaxId: 395019]}
msrlivvsnrvaigedtrpsagglavgvmdalqetggvwfgwngeivgtpdaapairrdg
nvtyatvgltrrdydqyyrgfsnatlwpvfhyrgdlarfdrqeyagylrvnamlakqlaa
llrpddliwvhdyhllpfahalrelgvknpigfflhipfpspdvlrlvpphdelvkfmca
ydvtgfqtdadrqaftdyierrgigtasedgmlhahgrvvkvaaypigvypdaiaqaavq
ygarkpvkmlrdalggrklvmsvdrldyskglverfqafermlanapgwqgrvslvqiap
ptrsdvqtyqriretlegeagringrfsqldwtpiqylnrkyernllmaffrmsqvgyvt
plrdgmnlvakeyvasqdpadpgvlvlsefagaaaeltgallvnpydlsqmadalerals
mplaerqarheenlarlrandlsvwrdtfvadlrsvaaaas

Sequence, based on observed residues (ATOM records): (download)

>d5uofb_ c.87.1.0 (B:) automated matches {Burkholderia multivorans [TaxId: 395019]}
msrlivvsnrvaigedtrpsagglavgvmdalqetggvwfgwngeivgtpdaapairrdg
nvtyatvgltrrdydqyyrgfsnatlwpvfhyrgdlarfdrqeyagylrvnamlakqlaa
llrpddliwvhdyhllpfahalrelgvknpigfflhipfpspdvlrlvpphdelvkfmca
ydvtgfqtdadrqaftdyierrgigtasedgmlhahgrvvkvaaypigvypdaiaqaavq
ygarkpvkmlrdalggrklvmsvdrldyskglverfqafermlanapgwqgrvslvqiap
ptdvqtyqriretlegeagringrfsqldwtpiqylnrkyernllmaffrmsqvgyvtpl
rdgmnlvakeyvasqdpadpgvlvlsefagaaaeltgallvnpydlsqmadaleralsmp
laerqarheenlarlrandlsvwrdtfvadlrsvaaaas

SCOPe Domain Coordinates for d5uofb_:

Click to download the PDB-style file with coordinates for d5uofb_.
(The format of our PDB-style files is described here.)

Timeline for d5uofb_:

  • d5uofb_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-16