SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5umfa_ (5umf A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2079053Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 2079793Family c.1.2.0: automated matches [191350] (1 protein)
    not a true family
  6. 2079794Protein automated matches [190292] (34 species)
    not a true protein
  7. 2286570Species Neisseria gonorrhoeae [TaxId:521006] [329871] (1 PDB entry)
  8. 2286571Domain d5umfa_: 5umf A: [329872]
    automated match to d3ovrb_
    complexed with gol, po4, zn

Details for d5umfa_

PDB Entry: 5umf (more details), 1.4 Å

PDB Description: crystal structure of a ribulose-phosphate 3-epimerase from neisseria gonorrhoeae with bound phosphate
PDB Compounds: (A:) ribulose-phosphate 3-epimerase

SCOPe Domain Sequences for d5umfa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5umfa_ c.1.2.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 521006]}

SCOPe Domain Coordinates for d5umfa_:

Click to download the PDB-style file with coordinates for d5umfa_.
(The format of our PDB-style files is described here.)

Timeline for d5umfa_:

  • d5umfa_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-16