Lineage for d5knlf1 (5knl F:1-167)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2164133Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 2164134Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 2164520Family d.20.1.0: automated matches [191322] (1 protein)
    not a true family
  6. 2164521Protein automated matches [190120] (8 species)
    not a true protein
  7. 2286486Species Schizosaccharomyces pombe [TaxId:284812] [329787] (1 PDB entry)
  8. 2286487Domain d5knlf1: 5knl F:1-167 [329788]
    Other proteins in same PDB: d5knlb_, d5knlc2, d5knle_, d5knlf2
    automated match to d2ucza_
    complexed with so4

Details for d5knlf1

PDB Entry: 5knl (more details), 2.5 Å

PDB Description: crystal structure of s. pombe ubiquitin e1 (uba1) in complex with ubc15 and ubiquitin
PDB Compounds: (F:) Ubiquitin-conjugating enzyme E2 15

SCOPe Domain Sequences for d5knlf1:

Sequence, based on SEQRES records: (download)

>d5knlf1 d.20.1.0 (F:1-167) automated matches {Schizosaccharomyces pombe [TaxId: 284812]}
mpssaseqllrkqlkeiqknppqgfsvglvddksifewevmiigpedtlyeggffhatls
fpqdyplmppkmkftteiwhpnvhpngevcisilhppgddkygyedagerwlpvhspeti
lisvismlsspndespanidaakefrenpqefkkrvrrlvrrsiemi

Sequence, based on observed residues (ATOM records): (download)

>d5knlf1 d.20.1.0 (F:1-167) automated matches {Schizosaccharomyces pombe [TaxId: 284812]}
mpssaseqllrkqlkeiqknppqgfsvglvddksifewevmiigpedtlyeggffhatls
fpqdyplmppkmkftteiwhpnvhpngevcisilhppgderwlpvhspetilisvismls
spndespanidaakefrenpqefkkrvrrlvrrsiemi

SCOPe Domain Coordinates for d5knlf1:

Click to download the PDB-style file with coordinates for d5knlf1.
(The format of our PDB-style files is described here.)

Timeline for d5knlf1:

  • d5knlf1 appears in periodic updates to SCOPe 2.06 starting on 2017-02-16