SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5kgra_ (5kgr A:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2152584Fold d.2: Lysozyme-like [53954] (1 superfamily)
    common alpha+beta motif for the active site region
  4. 2152585Superfamily d.2.1: Lysozyme-like [53955] (12 families) (S)
  5. 2153717Family d.2.1.3: Phage lysozyme [53981] (4 protein domains)
  6. 2153723Protein Phage T4 lysozyme [53982] (1 species)
  7. 2153724Species Bacteriophage T4 [TaxId:10665] [53983] (567 PDB entries)
    Uniprot P00720
    many mutant structures
  8. 2286468Domain d5kgra_: 5kgr A: [329769]
    automated match to d1zura_
    complexed with cl, hez, k, v1a

Details for d5kgra_

PDB Entry: 5kgr (more details), 1.47 Å

PDB Description: spin-labeled t4 lysozyme construct i9v1/v131v1 (30 days)
PDB Compounds: (A:) endolysin

SCOPe Domain Sequences for d5kgra_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5kgra_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
mnifemlrcdeglrlkiykdtegyytigighlltkspslnaakseldkaigrntngvitk
deaeklfnqdvdaavrgilrnaklkpvydsldavrraalinmvfqmgetgvagftnslrm
lqqkrwdeaacnlaksrwynqtpnrakrvittfrtgtwdayknl

SCOPe Domain Coordinates for d5kgra_:

Click to download the PDB-style file with coordinates for d5kgra_.
(The format of our PDB-style files is described here.)

Timeline for d5kgra_:

  • d5kgra_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-15