SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5b1mg_ (5b1m G:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1986516Fold a.22: Histone-fold [47112] (1 superfamily)
    core: 3 helices; long middle helix is flanked at each end with shorter ones
  4. 1986517Superfamily a.22.1: Histone-fold [47113] (5 families) (S)
  5. 1986518Family a.22.1.1: Nucleosome core histones [47114] (6 protein domains)
    form octamers composed of two copies of each of the four histones
  6. 1986958Protein automated matches [193445] (6 species)
    not a true protein
  7. 1987109Species Mouse (Mus musculus) [TaxId:10090] [254907] (3 PDB entries)
  8. 2286405Domain d5b1mg_: 5b1m G: [329706]
    automated match to d2pyoc_
    protein/DNA complex

Details for d5b1mg_

PDB Entry: 5b1m (more details), 2.34 Å

PDB Description: the mouse nucleosome structure containing h3.1
PDB Compounds: (G:) Histone H2A type 1

SCOPe Domain Sequences for d5b1mg_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5b1mg_ a.22.1.1 (G:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
ktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnk
ktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk

SCOPe Domain Coordinates for d5b1mg_:

Click to download the PDB-style file with coordinates for d5b1mg_.
(The format of our PDB-style files is described here.)

Timeline for d5b1mg_:

  • d5b1mg_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-15