SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5u08d_ (5u08 D:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2187564Fold d.108: Acyl-CoA N-acyltransferases (Nat) [55728] (1 superfamily)
    3 layers: a/b/a; contains mixed beta-sheet
  4. 2187565Superfamily d.108.1: Acyl-CoA N-acyltransferases (Nat) [55729] (11 families) (S)
  5. 2188102Family d.108.1.0: automated matches [191308] (1 protein)
    not a true family
  6. 2188103Protein automated matches [190038] (37 species)
    not a true protein
  7. 2271491Species Uncultured bacterium [TaxId:77133] [314792] (2 PDB entries)
  8. 2286336Domain d5u08d_: 5u08 D: [329637]
    automated match to d5hmnc_
    complexed with act, ca, mg, sis

Details for d5u08d_

PDB Entry: 5u08 (more details), 1.52 Å

PDB Description: crystal structure of an aminoglycoside acetyltransferase env0020 from an uncultured soil metagenomic sample in complex with sisomicin
PDB Compounds: (D:) aac3-I

SCOPe Domain Sequences for d5u08d_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5u08d_ d.108.1.0 (D:) automated matches {Uncultured bacterium [TaxId: 77133]}
nflkierlaendlpkfiqlirlfeavfemknfsipdsehlqkllnqnnfyvfvallenki
vggltsyvleqyysekplayiydlavdtnwqrqgigkklitatnqfytekgfeevfvqad
kvddyaldfarstkptaeeqvvhfyytlk

SCOPe Domain Coordinates for d5u08d_:

Click to download the PDB-style file with coordinates for d5u08d_.
(The format of our PDB-style files is described here.)

Timeline for d5u08d_:

  • d5u08d_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-09