SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5lg4a1 (5lg4 A:36-227)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1997864Fold a.47: STAT-like [47654] (6 superfamilies)
    4 long helices; bundle, left-handed twist (coiled coil); right-handed superhelix
  4. 1997877Superfamily a.47.2: t-snare proteins [47661] (1 family) (S)
  5. 1997878Family a.47.2.1: t-snare proteins [47662] (6 protein domains)
  6. 1997902Protein automated matches [191190] (4 species)
    not a true protein
  7. 2286207Species Saccharomyces cerevisiae [TaxId:559292] [329508] (2 PDB entries)
  8. 2286262Domain d5lg4a1: 5lg4 A:36-227 [329563]
    Other proteins in same PDB: d5lg4a2
    automated match to d1fioa_
    complexed with so4

Details for d5lg4a1

PDB Entry: 5lg4 (more details), 2.9 Å

PDB Description: crystal structure of the sec3/sso2 complex at 2.9 angstrom resolution
PDB Compounds: (A:) Protein SSO2

SCOPe Domain Sequences for d5lg4a1:

Sequence, based on SEQRES records: (download)

>d5lg4a1 a.47.2.1 (A:36-227) automated matches {Saccharomyces cerevisiae [TaxId: 559292]}
dfvafmnkinsinanlsryeniinqidaqhkdlltqvseeqemelrrslddyisqatdlq
yqlkadikdaqrdglhdsnkqaqaencrqkflkliqdyriidsnykeeskeqakrqytii
qpeatdeeveaaindvngqqifsqallnanrrgeaktalaevqarhqellklektmaelt
qlfndmeelvie

Sequence, based on observed residues (ATOM records): (download)

>d5lg4a1 a.47.2.1 (A:36-227) automated matches {Saccharomyces cerevisiae [TaxId: 559292]}
dfvafmnkinsinanlsryeniinqidaqhkdlltqvseeqemelrrslddyisqatdlq
yqlkadikdaqrdglhdsnkqaqaencrqkflkliqdyriidsnykeeskeqakrqytii
qpeatdeeveaaindvngqqifsqallaktalaevqarhqellklektmaeltqlfndme
elvie

SCOPe Domain Coordinates for d5lg4a1:

Click to download the PDB-style file with coordinates for d5lg4a1.
(The format of our PDB-style files is described here.)

Timeline for d5lg4a1:

  • d5lg4a1 appears in periodic updates to SCOPe 2.06 starting on 2017-02-09