Lineage for d5hyva1 (5hyv A:2-334)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108851Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2108852Protein automated matches [227126] (20 species)
    not a true protein
  7. 2285547Species Scheffersomyces stipitis [TaxId:322104] [328848] (7 PDB entries)
  8. 2286249Domain d5hyva1: 5hyv A:2-334 [329550]
    Other proteins in same PDB: d5hyva3
    automated match to d1ay0a1
    complexed with 1pe, ca, tpp

Details for d5hyva1

PDB Entry: 5hyv (more details), 1.03 Å

PDB Description: crystal structure of transketolase with thdp from pichia stipitis
PDB Compounds: (A:) transketolase

SCOPe Domain Sequences for d5hyva1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5hyva1 c.36.1.0 (A:2-334) automated matches {Scheffersomyces stipitis [TaxId: 322104]}
ssvdqkaistirllavdavaaansghpgaplglapaahavfkkmrfnpkdtkwinrdrfv
lsnghacallysmlvlygydltvedlkkfrqlgsktpghpentdvpgaevttgplgqgic
ngvgialaqaqfaatynkpdfpisdsytyvflgdgclmegvsseasslaghlqlgnliaf
wddnkisidgstevaftedviaryksygwhivevsdadtditaiaaaideakkvtnkptl
vrltttigfgslaqgthgvhgaplkaddikqlktkwgfnpeesfavpaevtasynehvae
nqkiqqqwnelfaaykqkypelgaelqrrldgk

SCOPe Domain Coordinates for d5hyva1:

Click to download the PDB-style file with coordinates for d5hyva1.
(The format of our PDB-style files is described here.)

Timeline for d5hyva1:

  • d5hyva1 appears in periodic updates to SCOPe 2.06 starting on 2017-02-09