SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Saccharomyces cerevisiae [TaxId: 559292]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1997864Fold a.47: STAT-like [47654] (6 superfamilies)
    4 long helices; bundle, left-handed twist (coiled coil); right-handed superhelix
  4. 1997877Superfamily a.47.2: t-snare proteins [47661] (1 family) (S)
  5. 1997878Family a.47.2.1: t-snare proteins [47662] (6 protein domains)
  6. 1997902Protein automated matches [191190] (4 species)
    not a true protein
  7. 2286207Species Saccharomyces cerevisiae [TaxId:559292] [329508] (2 PDB entries)

PDB entries in Species: Saccharomyces cerevisiae [TaxId: 559292]:

  1. Domain(s) for 5lg4:
  2. Domain(s) for 5m4y:
    1. 2286208Domain d5m4ye1: 5m4y E:36-227 [329509]
      Other proteins in same PDB: d5m4ya2, d5m4yc2, d5m4ye2
      automated match to d1fioa_
      complexed with gol
    2. 2286253Domain d5m4yc1: 5m4y C:36-223 [329554]
      Other proteins in same PDB: d5m4ya2, d5m4yc2, d5m4ye2
      automated match to d1fioa_
      complexed with gol
    3. 2286289Domain d5m4ya1: 5m4y A:36-225 [329590]
      Other proteins in same PDB: d5m4ya2, d5m4yc2, d5m4ye2
      automated match to d1fioa_
      complexed with gol

More info for Species Saccharomyces cerevisiae [TaxId:559292] from a.47.2.1 automated matches

Timeline for Species Saccharomyces cerevisiae [TaxId:559292] from a.47.2.1 automated matches:

  • Species Saccharomyces cerevisiae [TaxId:559292] from a.47.2.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-08