SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Escherichia coli [TaxId: 83333]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143226Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 2143333Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 2143341Family c.92.2.2: TroA-like [53811] (6 protein domains)
  6. 2143368Protein automated matches [191053] (5 species)
    not a true protein
  7. 2286203Species Escherichia coli [TaxId:83333] [329504] (3 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 83333]:

  1. Domain(s) for 5m29:
    1. 2286204Domain d5m29b_: 5m29 B: [329505]
      automated match to d1n2za_
      complexed with cby, cyn, gol
    2. 2286269Domain d5m29a_: 5m29 A: [329570]
      automated match to d1n2za_
      complexed with cby, cyn, gol
  2. Domain(s) for 5m34:
    1. 2287129Domain d5m34a_: 5m34 A: [330430]
      Other proteins in same PDB: d5m34b2
      automated match to d1n2za_
      complexed with cby, cyn, gol; mutant
    2. 2287211Domain d5m34b1: 5m34 B:22-265 [330512]
      Other proteins in same PDB: d5m34b2
      automated match to d1n2za_
      complexed with cby, cyn, gol; mutant
  3. Domain(s) for 5m3b:
    1. 2287088Domain d5m3bb1: 5m3b B:22-266 [330389]
      Other proteins in same PDB: d5m3bb2
      automated match to d1n2za_
      complexed with cby, cyn, gol; mutant
    2. 2287125Domain d5m3ba_: 5m3b A: [330426]
      Other proteins in same PDB: d5m3bb2
      automated match to d1n2za_
      complexed with cby, cyn, gol; mutant

More info for Species Escherichia coli [TaxId:83333] from c.92.2.2 automated matches

Timeline for Species Escherichia coli [TaxId:83333] from c.92.2.2 automated matches:

  • Species Escherichia coli [TaxId:83333] from c.92.2.2 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-08