SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5idia_ (5idi A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2082913Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 protein domains)
  6. 2083072Protein automated matches [190245] (11 species)
    not a true protein
  7. 2286141Species Thermotoga neapolitana [TaxId:2337] [329442] (1 PDB entry)
  8. 2286142Domain d5idia_: 5idi A: [329443]
    automated match to d1oima_
    complexed with act; mutant

Details for d5idia_

PDB Entry: 5idi (more details), 1.9 Å

PDB Description: structure of beta glucosidase 1a from thermotoga neapolitana, mutant e349a
PDB Compounds: (A:) 1,4-beta-D-glucan glucohydrolase

SCOPe Domain Sequences for d5idia_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5idia_ c.1.8.4 (A:) automated matches {Thermotoga neapolitana [TaxId: 2337]}
mkkfpegflwgvatasyqiegspladgagmsiwhtfshtpgnvkngdtgdvacdhynrwk
edieiiekigakayrfsiswprilpegtgkvnqkgldfynriidtlleknitpfitiyhw
dlpfslqlkggwanrdiadwfaeysrvlfenfgdrvkhwitlnelwvvaivghlygvhap
gmkdiyvafhtvhnllrahaksvkvfretvkdgkigivfnngyfepasereediraarfm
hqfnnyplflnpiyrgeypdlvlefareylprnyeddmeeikqeidfvglnyysghmvky
dpnsparvsfvernlpktamgweivpegiywilkgvkeeynpqevyitgngaafddvvse
ggkvhdqnridylrahieqvwraiqdgvplkgyfvwslldnfewaegyskrfgivyvdyn
tqkriikdsgywysnviknnglt

SCOPe Domain Coordinates for d5idia_:

Click to download the PDB-style file with coordinates for d5idia_.
(The format of our PDB-style files is described here.)

Timeline for d5idia_:

  • d5idia_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-08