SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Escherichia coli [TaxId: 340197]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2033719Superfamily b.1.33: Membrane antigen precursor-like [310605] (2 families) (S)
    Pfam PF10634
  5. 2033737Family b.1.33.0: automated matches [310673] (1 protein)
    not a true family
  6. 2033738Protein automated matches [310872] (2 species)
    not a true protein
  7. 2286133Species Escherichia coli [TaxId:340197] [329434] (2 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 340197]:

  1. Domain(s) for 5i0x:
    1. 2286134Domain d5i0xb1: 5i0x B:3-153 [329435]
      Other proteins in same PDB: d5i0xa2, d5i0xb2
      automated match to d3lznb_
      complexed with cu
    2. 2286169Domain d5i0xa1: 5i0x A:3-153 [329470]
      Other proteins in same PDB: d5i0xa2, d5i0xb2
      automated match to d3lznb_
      complexed with cu
  2. Domain(s) for 5i0y:
    1. 2286136Domain d5i0ya_: 5i0y A: [329437]
      Other proteins in same PDB: d5i0yb2
      automated match to d3lznb_
      complexed with cu
    2. 2286155Domain d5i0yb1: 5i0y B:3-153 [329456]
      Other proteins in same PDB: d5i0yb2
      automated match to d3lznb_
      complexed with cu

More info for Species Escherichia coli [TaxId:340197] from b.1.33.0 automated matches

Timeline for Species Escherichia coli [TaxId:340197] from b.1.33.0 automated matches:

  • Species Escherichia coli [TaxId:340197] from b.1.33.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-08