SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Escherichia coli [TaxId: 83333]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2172847Superfamily d.58.4: Dimeric alpha+beta barrel [54909] (24 families) (S)
    dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers
  5. 2173213Family d.58.4.0: automated matches [191316] (1 protein)
    not a true family
  6. 2173214Protein automated matches [190081] (25 species)
    not a true protein
  7. 2286120Species Escherichia coli [TaxId:83333] [329421] (1 PDB entry)

PDB entry in Species: Escherichia coli [TaxId: 83333]:

More info for Species Escherichia coli [TaxId:83333] from d.58.4.0 automated matches

Timeline for Species Escherichia coli [TaxId:83333] from d.58.4.0 automated matches:

  • Species Escherichia coli [TaxId:83333] from d.58.4.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-08