SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5uidd_ (5uid D:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2132229Family c.67.1.0: automated matches [191328] (1 protein)
    not a true family
  6. 2132230Protein automated matches [190151] (111 species)
    not a true protein
  7. 2286017Species Streptoalloteichus hindustanus [TaxId:2017] [329318] (1 PDB entry)
  8. 2286018Domain d5uidd_: 5uid D: [329319]
    automated match to d4piwb_
    complexed with plp, so4

Details for d5uidd_

PDB Entry: 5uid (more details), 2.18 Å

PDB Description: the crystal structure of an aminotransferase tlmj from streptoalloteichus hindustanus
PDB Compounds: (D:) Aminotransferase TlmJ

SCOPe Domain Sequences for d5uidd_:

Sequence, based on SEQRES records: (download)

>d5uidd_ c.67.1.0 (D:) automated matches {Streptoalloteichus hindustanus [TaxId: 2017]}
minvfqptlgeaelaavrevfasgwlgrgprtkvfeadfaehlgvgaeqvvsvscctegl
flsmellgvgpgdevvlpsisfvgaanaiaargarpvfcdvdpatlnptadhvaeklgpr
tkavvvlhyggypgdlvaiaelcrergvplvedsacavasqvdgracgtlgdvgvwsfda
mkilvtgdggmlcfrdpelaerarklaslgmaqssgfanatadaearwwefevtafgrrs
isndvaasigsvqlrrlpefvrrrreiaerydqglstvdglrcppplpaghtssyyfywv
rmdasvrdamarrlydrgvyttfryaplhlvsayghegslpgaeraaeetlclplhqals
dsdvetvigevraglaalta

Sequence, based on observed residues (ATOM records): (download)

>d5uidd_ c.67.1.0 (D:) automated matches {Streptoalloteichus hindustanus [TaxId: 2017]}
minvfqptlgeaelaavrevfasgwlgrgprtkvfeadfaehlgvgaeqvvsvscctegl
flsmellgvgpgdevvlpsisfvgaanaiaargarpvfcdvdpatlnptadhvaeklgpr
tkavvvlhyggypgdlvaiaelcrergvplvedsacavasqvdgracgtlgdvgvwsfda
mkilvtgdggmlcfrdpelaerarklaslgmarwwefevtafgrrsisndvaasigsvql
rrlpefvrrrreiaerydqglstvdglrcppplpaghtssyyfywvrmdasvrdamarrl
ydrgvyttfryaplhlvsayghegslpgaeraaeetlclplhqalsdsdvetvigevrag
laalta

SCOPe Domain Coordinates for d5uidd_:

Click to download the PDB-style file with coordinates for d5uidd_.
(The format of our PDB-style files is described here.)

Timeline for d5uidd_:

  • d5uidd_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-02