Lineage for d5k3db_ (5k3d B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2134062Fold c.69: alpha/beta-Hydrolases [53473] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest
  4. 2134063Superfamily c.69.1: alpha/beta-Hydrolases [53474] (42 families) (S)
    many members have left-handed crossover connection between strand 8 and additional strand 9
  5. 2136079Family c.69.1.0: automated matches [191404] (1 protein)
    not a true family
  6. 2136080Protein automated matches [190543] (88 species)
    not a true protein
  7. 2285917Species Rhodopseudomonas palustris [TaxId:258594] [329218] (7 PDB entries)
  8. 2285937Domain d5k3db_: 5k3d B: [329238]
    Other proteins in same PDB: d5k3da2
    automated match to d3r40a_

Details for d5k3db_

PDB Entry: 5k3d (more details), 1.45 Å

PDB Description: crystal structure of the fluoroacetate dehalogenase rpa1163 - wt/apo - no halide
PDB Compounds: (B:) Fluoroacetate Dehalogenase

SCOPe Domain Sequences for d5k3db_:

Sequence, based on SEQRES records: (download)

>d5k3db_ c.69.1.0 (B:) automated matches {Rhodopseudomonas palustris [TaxId: 258594]}
ladlfpgfgsewintssgrifarvggdgppllllhgfpqthvmwhrvapklaerfkviva
dlpgygwsdmpesdeqhtpytkramakqlieameqlghvhfalaghdrgarvsyrlalds
pgrlsklavldilptyeywqrmnrayalkiyhwsflaqpaplpenllggdpdfyvkakla
swtragdlsafdpravehyriafadpmrrhvmcedyragayadfehdkidveagnkipvp
mlalwgasgiaqsaatpldvwrkwasdvqgapiesghflpeeapdqtaealvrffs

Sequence, based on observed residues (ATOM records): (download)

>d5k3db_ c.69.1.0 (B:) automated matches {Rhodopseudomonas palustris [TaxId: 258594]}
ladlfpgfgsewintssgrifarvggdgppllllhgfpqthvmwhrvapklaerfkviva
dlpgygwsdmpesdeqhtpytkramakqlieameqlghvhfalaghdrgarvsyrlalds
pgrlsklavldilptyeywqrmnrayalkiyhwsflaqpaplpenllggdpdfyvkakla
swtragdlsafdpravehyriafadpmrrhvmcedyragayadfehdkidveagnkipvp
mlalwgastpldvwrkwasdvqgapiesghflpeeapdqtaealvrffs

SCOPe Domain Coordinates for d5k3db_:

Click to download the PDB-style file with coordinates for d5k3db_.
(The format of our PDB-style files is described here.)

Timeline for d5k3db_:

  • d5k3db_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-02