SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Rhodopseudomonas palustris [TaxId: 258594]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2134062Fold c.69: alpha/beta-Hydrolases [53473] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest
  4. 2134063Superfamily c.69.1: alpha/beta-Hydrolases [53474] (42 families) (S)
    many members have left-handed crossover connection between strand 8 and additional strand 9
  5. 2136079Family c.69.1.0: automated matches [191404] (1 protein)
    not a true family
  6. 2136080Protein automated matches [190543] (85 species)
    not a true protein
  7. 2285917Species Rhodopseudomonas palustris [TaxId:258594] [329218] (7 PDB entries)

PDB entries in Species: Rhodopseudomonas palustris [TaxId: 258594]:

  1. Domain(s) for 5k3a:
    1. 2285923Domain d5k3ab_: 5k3a B: [329224]
      automated match to d3r41b_
      complexed with cl
    2. 2285931Domain d5k3aa_: 5k3a A: [329232]
      automated match to d3r41b_
      complexed with cl
  2. Domain(s) for 5k3b:
    1. 2285922Domain d5k3ba_: 5k3b A: [329223]
      automated match to d3r40a_
      complexed with cl, r3w
    2. 2285948Domain d5k3bb_: 5k3b B: [329249]
      automated match to d3r40a_
      complexed with cl, r3w
  3. Domain(s) for 5k3c:
    1. 2285927Domain d5k3ca_: 5k3c A: [329228]
      automated match to d3r40a_
      complexed with cl
    2. 2285949Domain d5k3cb_: 5k3c B: [329250]
      automated match to d3r40a_
      complexed with cl
  4. Domain(s) for 5k3d:
    1. 2285918Domain d5k3da1: 5k3d A:4-299 [329219]
      Other proteins in same PDB: d5k3da2
      automated match to d3r40a_
    2. 2285937Domain d5k3db_: 5k3d B: [329238]
      Other proteins in same PDB: d5k3da2
      automated match to d3r40a_
  5. Domain(s) for 5k3e:
    1. 2285928Domain d5k3eb_: 5k3e B: [329229]
      automated match to d3r40a_
      complexed with cl, goa
    2. 2285950Domain d5k3ea_: 5k3e A: [329251]
      automated match to d3r40a_
      complexed with cl, goa
  6. Domain(s) for 5k3f:
    1. 2285934Domain d5k3fb_: 5k3f B: [329235]
      automated match to d3r41b_
      complexed with cl
    2. 2285938Domain d5k3fa_: 5k3f A: [329239]
      automated match to d3r41b_
      complexed with cl
  7. Domain(s) for 5swn:
    1. 2285991Domain d5swnb_: 5swn B: [329292]
      automated match to d3r40a_
      complexed with cl, fah
    2. 2286071Domain d5swna_: 5swn A: [329372]
      automated match to d3r40a_
      complexed with cl, fah

More info for Species Rhodopseudomonas palustris [TaxId:258594] from c.69.1.0 automated matches

Timeline for Species Rhodopseudomonas palustris [TaxId:258594] from c.69.1.0 automated matches:

  • Species Rhodopseudomonas palustris [TaxId:258594] from c.69.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-02