SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Mangifera indica [TaxId: 29780]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2116932Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
  4. 2116933Superfamily c.47.1: Thioredoxin-like [52833] (24 families) (S)
  5. 2118983Family c.47.1.0: automated matches [191312] (1 protein)
    not a true family
  6. 2118984Protein automated matches [190056] (160 species)
    not a true protein
  7. 2285877Species Mangifera indica [TaxId:29780] [329178] (3 PDB entries)

PDB entries in Species: Mangifera indica [TaxId: 29780]:

  1. Domain(s) for 5g5e:
  2. Domain(s) for 5g5f:
  3. Domain(s) for 5kej:
    1. 2285943Domain d5kejb1: 5kej B:2-84 [329244]
      Other proteins in same PDB: d5keja2, d5kejb2
      automated match to d5agya1
      complexed with gtx, peg
    2. 2285976Domain d5keja1: 5kej A:2-84 [329277]
      Other proteins in same PDB: d5keja2, d5kejb2
      automated match to d5agya1
      complexed with gtx, peg

More info for Species Mangifera indica [TaxId:29780] from c.47.1.0 automated matches

Timeline for Species Mangifera indica [TaxId:29780] from c.47.1.0 automated matches:

  • Species Mangifera indica [TaxId:29780] from c.47.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-01