SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5kg9b1 (5kg9 B:1-108)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2026644Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2026645Protein automated matches [190740] (27 species)
    not a true protein
  7. 2028399Species Mouse (Mus musculus) [TaxId:10090] [188198] (546 PDB entries)
  8. 2285727Domain d5kg9b1: 5kg9 B:1-108 [329028]
    automated match to d4k3el1

Details for d5kg9b1

PDB Entry: 5kg9 (more details), 2.3 Å

PDB Description: crystal structure of the gp120 v2 antibody re505-22 fab from igh- and igk-humanized mouse
PDB Compounds: (B:) Antibody RE505-22 Fab light chain

SCOPe Domain Sequences for d5kg9b1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5kg9b1 b.1.1.0 (B:1-108) automated matches {Mus musculus, [TaxId: 10090]}
qlvltqsssasfslgasakltctlssqhstytiewyqqqplkppkfvmelrkdgshntgd
gipdrfsgsssgadrylsisniqpedeaiyicgvgdtikeqfvyvfgggtkvtvlg

SCOPe Domain Coordinates for d5kg9b1:

Click to download the PDB-style file with coordinates for d5kg9b1.
(The format of our PDB-style files is described here.)

Timeline for d5kg9b1:

  • d5kg9b1 appears in periodic updates to SCOPe 2.06 starting on 2017-01-26

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d5kg9b2