SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5hqlf1 (5hql F:1-138)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2175267Superfamily d.58.9: RuBisCO, large subunit, small (N-terminal) domain [54966] (2 families) (S)
    C-terminal domain is beta/alpha barrel
  5. 2175463Family d.58.9.0: automated matches [227234] (1 protein)
    not a true family
  6. 2175464Protein automated matches [226983] (18 species)
    not a true protein
  7. 2285581Species Rhodopseudomonas palustris [TaxId:1] [328882] (1 PDB entry)
  8. 2285665Domain d5hqlf1: 5hql F:1-138 [328966]
    Other proteins in same PDB: d5hqla2, d5hqlb2, d5hqlc2, d5hqld2, d5hqle2, d5hqlf2
    automated match to d4lf2a1
    complexed with cap, mg; mutant

Details for d5hqlf1

PDB Entry: 5hql (more details), 2.53 Å

PDB Description: structure function studies of r. palustris rubisco (a47v-m331a mutant; cabp-bound; no expression tag)
PDB Compounds: (F:) Ribulose bisphosphate carboxylase

SCOPe Domain Sequences for d5hqlf1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5hqlf1 d.58.9.0 (F:1-138) automated matches {Rhodopseudomonas palustris [TaxId: 1]}
mdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfiqtaahfvaesstgtnvevst
tddftrgvdalvyevdeanslmkiaypielfdrnvidgramiasfltltignnqgmgdve
yakmydfyvppaylklfd

SCOPe Domain Coordinates for d5hqlf1:

Click to download the PDB-style file with coordinates for d5hqlf1.
(The format of our PDB-style files is described here.)

Timeline for d5hqlf1:

  • d5hqlf1 appears in periodic updates to SCOPe 2.06 starting on 2017-01-26