SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Thermus aquaticus [TaxId: 271]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2081497Family c.1.8.1: Amylase, catalytic domain [51446] (26 protein domains)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 2081989Protein automated matches [190099] (25 species)
    not a true protein
  7. 2285620Species Thermus aquaticus [TaxId:271] [328921] (1 PDB entry)

PDB entry in Species: Thermus aquaticus [TaxId: 271]:

More info for Species Thermus aquaticus [TaxId:271] from c.1.8.1 automated matches

Timeline for Species Thermus aquaticus [TaxId:271] from c.1.8.1 automated matches:

  • Species Thermus aquaticus [TaxId:271] from c.1.8.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-25