SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Scheffersomyces stipitis [TaxId: 322104]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108851Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2108852Protein automated matches [227126] (18 species)
    not a true protein
  7. 2285547Species Scheffersomyces stipitis [TaxId:322104] [328848] (7 PDB entries)

PDB entries in Species: Scheffersomyces stipitis [TaxId: 322104]:

  1. Domain(s) for 5hgx:
    1. 2285576Domain d5hgxa1: 5hgx A:2-334 [328877]
      Other proteins in same PDB: d5hgxa3
      automated match to d1ay0a1
      complexed with 1pe; mutant
    2. 2285577Domain d5hgxa2: 5hgx A:335-531 [328878]
      Other proteins in same PDB: d5hgxa3
      automated match to d1gpua2
      complexed with 1pe; mutant
  2. Domain(s) for 5hje:
    1. 2285548Domain d5hjea1: 5hje A:2-334 [328849]
      Other proteins in same PDB: d5hjea3
      automated match to d1ay0a1
      complexed with ca, i22, tpp
    2. 2285549Domain d5hjea2: 5hje A:335-531 [328850]
      Other proteins in same PDB: d5hjea3
      automated match to d1gpua2
      complexed with ca, i22, tpp
  3. Domain(s) for 5hyv:
    1. 2286249Domain d5hyva1: 5hyv A:2-334 [329550]
      Other proteins in same PDB: d5hyva3
      automated match to d1ay0a1
      complexed with 1pe, ca, tpp
    2. 2286250Domain d5hyva2: 5hyv A:335-531 [329551]
      Other proteins in same PDB: d5hyva3
      automated match to d1gpua2
      complexed with 1pe, ca, tpp
  4. Domain(s) for 5i4i:
    1. 2286624Domain d5i4ia1: 5i4i A:2-334 [329925]
      Other proteins in same PDB: d5i4ia3
      automated match to d1ay0a1
    2. 2286625Domain d5i4ia2: 5i4i A:335-531 [329926]
      Other proteins in same PDB: d5i4ia3
      automated match to d1gpua2
  5. Domain(s) for 5i51:
    1. 2286450Domain d5i51a1: 5i51 A:2-334 [329751]
      Other proteins in same PDB: d5i51a3
      automated match to d1ay0a1
      complexed with ca, f6r, peg, tpp; mutant
    2. 2286451Domain d5i51a2: 5i51 A:335-531 [329752]
      Other proteins in same PDB: d5i51a3
      automated match to d1gpua2
      complexed with ca, f6r, peg, tpp; mutant
  6. Domain(s) for 5i5e:
    1. 2286657Domain d5i5ea1: 5i5e A:2-334 [329958]
      Other proteins in same PDB: d5i5ea3
      automated match to d1ay0a1
      complexed with 5sp, ca, tpp; mutant
    2. 2286658Domain d5i5ea2: 5i5e A:335-531 [329959]
      Other proteins in same PDB: d5i5ea3
      automated match to d1gpua2
      complexed with 5sp, ca, tpp; mutant
  7. Domain(s) for 5i5g:
    1. 2286472Domain d5i5ga1: 5i5g A:2-334 [329773]
      Other proteins in same PDB: d5i5ga3
      automated match to d1ay0a1
      complexed with peg, pop; mutant
    2. 2286473Domain d5i5ga2: 5i5g A:335-531 [329774]
      Other proteins in same PDB: d5i5ga3
      automated match to d1gpua2
      complexed with peg, pop; mutant

More info for Species Scheffersomyces stipitis [TaxId:322104] from c.36.1.0 automated matches

Timeline for Species Scheffersomyces stipitis [TaxId:322104] from c.36.1.0 automated matches:

  • Species Scheffersomyces stipitis [TaxId:322104] from c.36.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-25