SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5hjzb1 (5hjz B:1-116)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2046974Superfamily b.34.6: Cell growth inhibitor/plasmid maintenance toxic component [50118] (4 families) (S)
    contains insert beta-sheet subdomain and C-terminal helix
  5. 2285221Family b.34.6.0: automated matches [328522] (1 protein)
    not a true family
  6. 2285222Protein automated matches [328523] (1 species)
    not a true protein
  7. 2285223Species Mycobacterium tuberculosis [TaxId:83332] [328524] (3 PDB entries)
  8. 2285496Domain d5hjzb1: 5hjz B:1-116 [328797]
    Other proteins in same PDB: d5hjzb2
    automated match to d4of1a_
    protein/RNA complex

Details for d5hjzb1

PDB Entry: 5hjz (more details), 1.98 Å

PDB Description: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
PDB Compounds: (B:) Endoribonuclease MazF9

SCOPe Domain Sequences for d5hjzb1:

Sequence, based on SEQRES records: (download)

>d5hjzb1 b.34.6.0 (B:1-116) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
mmrrgeiwqvdldpargseannqrpavvvsndranatatrlgrgvitvvpvtsniakvyp
fqvllsatttglqvdckaqaeqirsiaterllrpigrvsaaelaqldealklhldl

Sequence, based on observed residues (ATOM records): (download)

>d5hjzb1 b.34.6.0 (B:1-116) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
mmrrgeiwqvdldpargseannqrpavvvsndranatatrlgrgvitvvpvtsniakvyp
fqvllsattglqvdckaqaeqirsiaterllrpigrvsaaelaqldealklhldl

SCOPe Domain Coordinates for d5hjzb1:

Click to download the PDB-style file with coordinates for d5hjzb1.
(The format of our PDB-style files is described here.)

Timeline for d5hjzb1:

  • d5hjzb1 appears in periodic updates to SCOPe 2.06 starting on 2017-01-19

View in 3D
Domains from same chain:
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d5hjzb2
View in 3D
Domains from other chains:
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d5hjza_