SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5u2wd_ (5u2w D:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2090218Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2090219Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2094257Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 2094258Protein automated matches [190069] (226 species)
    not a true protein
  7. 2094600Species Burkholderia cenocepacia [TaxId:216591] [193149] (10 PDB entries)
  8. 2285485Domain d5u2wd_: 5u2w D: [328786]
    automated match to d4rf3a_
    complexed with edo, imd, nap

Details for d5u2wd_

PDB Entry: 5u2w (more details), 1.55 Å

PDB Description: crystal structure of a short chain dehydrogenase from burkholderia cenocepacia j2315 in complex with nadp
PDB Compounds: (D:) Short chain dehydrogenase

SCOPe Domain Sequences for d5u2wd_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5u2wd_ c.2.1.0 (D:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
nrlqgkralvtggsrgigaaiakrlaadgadvaityeksaeraqavvagiealgrraiai
qadsadpvavrnavdrvaeafggldilvnnagifragslddltlddidatlnvnvraviv
asqaaarhlgeggrivstgsclatrvpdagmslyaaskaaligwtqglardlgprgitvn
ivhpgstdtdmnpadgahadaqrsrmaiqqygkaddvaalvafvvgpegrsingtgltid
ggana

SCOPe Domain Coordinates for d5u2wd_:

Click to download the PDB-style file with coordinates for d5u2wd_.
(The format of our PDB-style files is described here.)

Timeline for d5u2wd_:

  • d5u2wd_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-19