SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Vibrio fischeri [TaxId: 312309]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2125386Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2125403Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 2125404Family c.56.2.1: Purine and uridine phosphorylases [53168] (7 protein domains)
  6. 2126112Protein automated matches [190142] (19 species)
    not a true protein
  7. 2285470Species Vibrio fischeri [TaxId:312309] [328771] (1 PDB entry)

PDB entry in Species: Vibrio fischeri [TaxId: 312309]:

More info for Species Vibrio fischeri [TaxId:312309] from c.56.2.1 automated matches

Timeline for Species Vibrio fischeri [TaxId:312309] from c.56.2.1 automated matches:

  • Species Vibrio fischeri [TaxId:312309] from c.56.2.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-19