SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5lnrd_ (5lnr D:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2079053Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 2079793Family c.1.2.0: automated matches [191350] (1 protein)
    not a true family
  6. 2079794Protein automated matches [190292] (32 species)
    not a true protein
  7. 2280329Species Arabidopsis thaliana [TaxId:3702] [323630] (8 PDB entries)
  8. 2285398Domain d5lnrd_: 5lnr D: [328699]
    automated match to d3fema_
    complexed with gol, plp

Details for d5lnrd_

PDB Entry: 5lnr (more details), 1.61 Å

PDB Description: crystal structure of arabidopsis thaliana pdx1-plp complex
PDB Compounds: (D:) Pyridoxal 5'-phosphate synthase subunit PDX1.3

SCOPe Domain Sequences for d5lnrd_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5lnrd_ c.1.2.0 (D:) automated matches {Arabidopsis thaliana [TaxId: 3702]}
pfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdpq
mikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfripf
vcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevftf
akklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdpa
rraraivqavthysdpemlvevscgl

SCOPe Domain Coordinates for d5lnrd_:

Click to download the PDB-style file with coordinates for d5lnrd_.
(The format of our PDB-style files is described here.)

Timeline for d5lnrd_:

  • d5lnrd_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-19