SCOPe 2.06: Domain d5lnwd_: 5lnw D:

Lineage for d5lnwd_ (5lnw D:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families)

5. Family c.1.2.0: automated matches [191350] (1 protein)
   not a true family

6. Protein automated matches [190292] (34 species)
   not a true protein

7. Species Arabidopsis thaliana [TaxId:3702] [323630] (8 PDB entries)

8. Domain d5lnwd_: 5lnw D: [328676]
   automated match to d3fema_
   complexed with gol, hg3, k8p, rp5

Details for d5lnwd_

PDB Entry: 5lnw, 1.9 Å

PDB Description: crystal structure of arabidopsis thaliana pdx1-i320-g3p complex

PDB Compounds: (D:) Pyridoxal 5'-phosphate synthase subunit PDX1.3

SCOPe Domain Sequences for d5lnwd_:

Sequence, based on SEQRES records:

>d5lnwd_ c.1.2.0 (D:) automated matches {Arabidopsis thaliana [TaxId: 3702]}
pfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdpq
mikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfripf
vcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevftf
akklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdpa
rraraivqavthysdpemlvevscgl

Sequence, based on observed residues (ATOM records):

>d5lnwd_ c.1.2.0 (D:) automated matches {Arabidopsis thaliana [TaxId: 3702]}
pfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdpq
mikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfripf
vcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevftf
akklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifparrar
aivqavthysdpemlvevscgl

Timeline for d5lnwd_:

• d5lnwd_ is new in SCOPe 2.06-stable
  
• d5lnwd_ appears in SCOPe 2.07
  
• d5lnwd_ appears in the current release, SCOPe 2.08