Lineage for d5lyjf2 (5lyj F:77-378)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2217268Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2217269Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2217619Family d.142.1.10: Tubulin tyrosine ligase (TTL) C-terminal domain-like [310626] (2 proteins)
    Pfam PF03133; PubMed 22020298
  6. 2217620Protein Tubulin tyrosine ligase (TTL) C-terminal domain [310728] (2 species)
  7. 2217621Species Chicken (Gallus gallus) [TaxId:9031] [311385] (39 PDB entries)
  8. 2217650Domain d5lyjf2: 5lyj F:77-378 [328660]
    Other proteins in same PDB: d5lyja1, d5lyja2, d5lyjb1, d5lyjb2, d5lyjc1, d5lyjc2, d5lyjd1, d5lyjd2, d5lyje_, d5lyjf1, d5lyjf3
    automated match to d3tiia2
    complexed with 7ba, acp, ca, gdp, gol, gtp, mes, mg

Details for d5lyjf2

PDB Entry: 5lyj (more details), 2.4 Å

PDB Description: tubulin-combretastatin a4 complex
PDB Compounds: (F:) Uncharacterized protein

SCOPe Domain Sequences for d5lyjf2:

Sequence, based on SEQRES records: (download)

>d5lyjf2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsesctwfpesyviyptnlktpvapaqngirhlinntrtderevflaayn
rrregregnvwiakssagakgegilisseaselldfideqgqvhviqkylekplllepgh
rkfdirswvlvdhlyniylyregvlrtssepynsanfqdktchltnhciqkeysknygry
eegnemffeefnqylmdalnttlensillqikhiirsclmciepaistkhlhyqsfqlfg
fdfmvdeelkvwlievngapacaqklyaelcqgivdvaissvfpladtgqktsqptsifi
kl

Sequence, based on observed residues (ATOM records): (download)

>d5lyjf2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsesctwfpesyviyptderevflaaynrrregregnvwiakssagaiss
easelldfideqgqvhviqkylekplllepghrkfdirswvlvdhlyniylyregvlrts
sepynsadktchltnhciqyeegnemffeefnqylmdalnttlensillqikhiirsclm
ciepaistkhlhyqsfqlfgfdfmvdeelkvwlievngapacaqklyaelcqgivdvais
svfplatsifikl

SCOPe Domain Coordinates for d5lyjf2:

Click to download the PDB-style file with coordinates for d5lyjf2.
(The format of our PDB-style files is described here.)

Timeline for d5lyjf2: