SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5jq6l2 (5jq6 L:113-216)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2026644Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2026645Protein automated matches [190740] (25 species)
    not a true protein
  7. 2028399Species Mouse (Mus musculus) [TaxId:10090] [188198] (535 PDB entries)
  8. 2285316Domain d5jq6l2: 5jq6 L:113-216 [328617]
    automated match to d4m61a2

Details for d5jq6l2

PDB Entry: 5jq6 (more details), 2.4 Å

PDB Description: crystal structure of clfa in complex with the fab fragment of tefibazumab
PDB Compounds: (L:) Tefibazumab FAB FRAGMENT LIGHT CHAIN

SCOPe Domain Sequences for d5jq6l2:

Sequence, based on SEQRES records: (download)

>d5jq6l2 b.1.1.0 (L:113-216) automated matches {Mus musculus, [TaxId: 10090]}
rtvaapsvfifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqd
skdstyslsstltlskadyekhkvyacevthqglsspvtksanr

Sequence, based on observed residues (ATOM records): (download)

>d5jq6l2 b.1.1.0 (L:113-216) automated matches {Mus musculus, [TaxId: 10090]}
rtvaapsvfifppsdeqlksgtasvvcllnnfypreakvqwkvnalqsgnsqesvteqds
kdstyslsstltlskadyekhkvyacevthqgpvtksanr

SCOPe Domain Coordinates for d5jq6l2:

Click to download the PDB-style file with coordinates for d5jq6l2.
(The format of our PDB-style files is described here.)

Timeline for d5jq6l2:

  • d5jq6l2 appears in periodic updates to SCOPe 2.06 starting on 2017-01-19