Lineage for d5ldqb_ (5ldq B:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2178385Fold d.61: LigT-like [55143] (1 superfamily)
    duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III
  4. 2178386Superfamily d.61.1: LigT-like [55144] (5 families) (S)
  5. 2178448Family d.61.1.0: automated matches [191492] (1 protein)
    not a true family
  6. 2178449Protein automated matches [190796] (5 species)
    not a true protein
  7. 2285265Species Escherichia coli [TaxId:469008] [328566] (7 PDB entries)
  8. 2285274Domain d5ldqb_: 5ldq B: [328575]
    automated match to d4qakb_
    complexed with 1pe, cl, nap, po4

Details for d5ldqb_

PDB Entry: 5ldq (more details), 1.7 Å

PDB Description: crystal structure of e.coli ligt complexed with nadp+
PDB Compounds: (B:) RNA 2',3'-cyclic phosphodiesterase

SCOPe Domain Sequences for d5ldqb_:

Sequence, based on SEQRES records: (download)

>d5ldqb_ d.61.1.0 (B:) automated matches {Escherichia coli [TaxId: 469008]}
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsnrpf
hphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

Sequence, based on observed residues (ATOM records): (download)

>d5ldqb_ d.61.1.0 (B:) automated matches {Escherichia coli [TaxId: 469008]}
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsnrpfhphit
llrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

SCOPe Domain Coordinates for d5ldqb_:

Click to download the PDB-style file with coordinates for d5ldqb_.
(The format of our PDB-style files is described here.)

Timeline for d5ldqb_:

  • d5ldqb_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-19