SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5ldqb_ (5ldq B:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2178385Fold d.61: LigT-like [55143] (1 superfamily)
    duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III
  4. 2178386Superfamily d.61.1: LigT-like [55144] (5 families) (S)
  5. 2178448Family d.61.1.0: automated matches [191492] (1 protein)
    not a true family
  6. 2178449Protein automated matches [190796] (5 species)
    not a true protein
  7. 2285265Species Escherichia coli [TaxId:469008] [328566] (7 PDB entries)
  8. 2285274Domain d5ldqb_: 5ldq B: [328575]
    automated match to d4qakb_
    complexed with 1pe, cl, nap, po4

Details for d5ldqb_

PDB Entry: 5ldq (more details), 1.7 Å

PDB Description: crystal structure of e.coli ligt complexed with nadp+
PDB Compounds: (B:) RNA 2',3'-cyclic phosphodiesterase

SCOPe Domain Sequences for d5ldqb_:

Sequence, based on SEQRES records: (download)

>d5ldqb_ d.61.1.0 (B:) automated matches {Escherichia coli [TaxId: 469008]}
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsnrpf
hphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

Sequence, based on observed residues (ATOM records): (download)

>d5ldqb_ d.61.1.0 (B:) automated matches {Escherichia coli [TaxId: 469008]}
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsnrpfhphit
llrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

SCOPe Domain Coordinates for d5ldqb_:

Click to download the PDB-style file with coordinates for d5ldqb_.
(The format of our PDB-style files is described here.)

Timeline for d5ldqb_:

  • d5ldqb_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-19